IL_5OPT_085

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUAC*GC

Length

7 nucleotides

Bulged bases

5OPT|1|E|G|797, 5OPT|1|E|U|798, 5OPT|1|E|A|799

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_085 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.2593

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5OPT|1|E|G|796
5OPT|1|E|G|797
5OPT|1|E|U|798
5OPT|1|E|A|799
5OPT|1|E|C|800
*
5OPT|1|E|G|836
5OPT|1|E|C|837

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain P

40S ribosomal protein S6

Chain h

RNA-binding protein, putative