IL_5OPT_090

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGUGAGGAUUGACA*UUUCUCGAUCCCCU

Length

29 nucleotides

Bulged bases

5OPT|1|E|G|1696, 5OPT|1|E|A|1724

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|G|1690
5OPT|1|E|G|1691
5OPT|1|E|G|1692
5OPT|1|E|U|1693
5OPT|1|E|G|1694
5OPT|1|E|A|1695
5OPT|1|E|G|1696
5OPT|1|E|G|1697
5OPT|1|E|A|1698
5OPT|1|E|U|1699
5OPT|1|E|U|1700
5OPT|1|E|G|1701
5OPT|1|E|A|1702
5OPT|1|E|C|1703
5OPT|1|E|A|1704
*
5OPT|1|E|U|1717
5OPT|1|E|U|1718
5OPT|1|E|U|1719
5OPT|1|E|C|1720
5OPT|1|E|U|1721
5OPT|1|E|C|1722
5OPT|1|E|G|1723
5OPT|1|E|A|1724
5OPT|1|E|U|1725
5OPT|1|E|C|1726
5OPT|1|E|C|1727
5OPT|1|E|C|1728
5OPT|1|E|C|1729
5OPT|1|E|U|1730

Current chains

Chain E

18S rRNA

Nearby chains

Chain i

40S ribosomal protein S12

Chain j

Ubiquitin/ribosomal protein S27a, putative

Chain n

40S ribosomal protein S10, putative

Chain t

40S ribosomal protein S15, putative