IL_5OQL_007

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACC*GACU

Length

7 nucleotides

Bulged bases

5OQL|1|1|C|136, 5OQL|1|1|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|1|A|135
5OQL|1|1|C|136
5OQL|1|1|C|137
*
5OQL|1|1|G|201
5OQL|1|1|A|202
5OQL|1|1|C|203
5OQL|1|1|U|204

Current chains

Chain 1

35S rRNA

Nearby chains

Chain D

Utp4

Chain H

U3 small nucleolar RNA-associated protein 11

Chain N

Utp18

Chain V

Snu13