IL_5OQL_009

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GCAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_009 not in the Motif Atlas

Geometric match to IL_3BNR_008

Geometric discrepancy: 0.306

The information below is about IL_3BNR_008

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5OQL|1|1|G|144
5OQL|1|1|C|145
5OQL|1|1|C|146
5OQL|1|1|C|147
*
5OQL|1|1|G|190
5OQL|1|1|C|191
5OQL|1|1|A|192
5OQL|1|1|U|193
5OQL|1|1|C|194

Current chains

Chain 1

35S rRNA

Nearby chains

Chain D

Utp4

Chain N

Utp18

Chain S

Nop1