IL_5OQL_015
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCU*AUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_015 not in the Motif Atlas
- Geometric match to IL_7A0S_020
- Geometric discrepancy: 0.101
- The information below is about IL_7A0S_020
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
5OQL|1|1|G|246
5OQL|1|1|C|247
5OQL|1|1|U|248
*
5OQL|1|2|A|70
5OQL|1|2|U|71
5OQL|1|2|C|72
Current chains
- Chain 1
- 35S rRNA
- Chain 2
- U3 snoRNA
Nearby chains
- Chain G
- Utp10
- Chain N
- Utp18
- Chain O
- Putative U3 snoRNP protein
- Chain U
- Nop58
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