IL_5OQL_016
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_016 not in the Motif Atlas
- Geometric match to IL_1I6U_002
- Geometric discrepancy: 0.117
- The information below is about IL_1I6U_002
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.2
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 23
Unit IDs
5OQL|1|1|G|296
5OQL|1|1|U|297
5OQL|1|1|A|298
5OQL|1|1|C|299
*
5OQL|1|1|G|342
5OQL|1|1|C|343
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain 0
- Faf1
- Chain F
- Utp7
- Chain K
- Utp14
- Chain a
- Imp3
Coloring options: