IL_5OQL_017

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UCG

Length

5 nucleotides

Bulged bases

5OQL|1|1|C|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_017 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.2961

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5OQL|1|1|U|301
5OQL|1|1|A|302
*
5OQL|1|1|U|338
5OQL|1|1|C|339
5OQL|1|1|G|340

Current chains

Chain 1

35S rRNA

Nearby chains

Chain 0

Faf1

Chain F

Utp7

Chain K

Utp14

Chain a

Imp3