IL_5OQL_021
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCUUC*GUCCUC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_021 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.2861
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OQL|1|1|G|368
5OQL|1|1|U|369
5OQL|1|1|C|370
5OQL|1|1|U|371
5OQL|1|1|U|372
5OQL|1|1|C|373
*
5OQL|1|1|G|393
5OQL|1|1|U|394
5OQL|1|1|C|395
5OQL|1|1|C|396
5OQL|1|1|U|397
5OQL|1|1|C|398
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain Q
- Utp30
- Chain Z
- Bms1
- Chain k
- Fcf2
Coloring options: