IL_5OQL_023
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUC*GUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_023 not in the Motif Atlas
- Geometric match to IL_3TD0_006
- Geometric discrepancy: 0.1495
- The information below is about IL_3TD0_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
5OQL|1|1|U|423
5OQL|1|1|U|424
5OQL|1|1|C|425
*
5OQL|1|2|G|48
5OQL|1|2|U|49
5OQL|1|2|G|50
Current chains
- Chain 1
- 35S rRNA
- Chain 2
- U3 snoRNA
Nearby chains
- Chain F
- Utp7
- Chain G
- Utp10
- Chain P
- Utp24
- Chain a
- Imp3
Coloring options: