IL_5OQL_026

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

5OQL|1|1|U|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_026 not in the Motif Atlas

Geometric match to IL_4V9F_107

Geometric discrepancy: 0.3175

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5OQL|1|1|C|449
5OQL|1|1|G|450
*
5OQL|1|1|C|482
5OQL|1|1|U|483
5OQL|1|1|G|484

Current chains

Chain 1

35S rRNA

Nearby chains

Chain E

Utp6

Chain K

Utp14