IL_5OQL_028

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_028 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.175

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5OQL|1|1|G|457
5OQL|1|1|A|458
5OQL|1|1|C|459
*
5OQL|1|1|G|473
5OQL|1|1|A|474
5OQL|1|1|C|475

Current chains

Chain 1

35S rRNA

Nearby chains

Chain K

Utp14

Chain T

Putative nucleolar protein

Chain d

Sof1