IL_5OQL_032
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 5OQL|1|1|A|1052
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_032 not in the Motif Atlas
- Geometric match to IL_3MXH_002
- Geometric discrepancy: 0.3136
- The information below is about IL_3MXH_002
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5OQL|1|1|U|624
5OQL|1|1|C|625
5OQL|1|1|A|626
5OQL|1|1|A|627
5OQL|1|1|A|628
*
5OQL|1|1|U|1050
5OQL|1|1|G|1051
5OQL|1|1|A|1052
5OQL|1|1|C|1053
5OQL|1|1|A|1054
5OQL|1|1|A|1055
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain Z
- Bms1
Coloring options: