IL_5OQL_039

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_039 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1825

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5OQL|1|1|C|733
5OQL|1|1|C|734
5OQL|1|1|G|735
5OQL|1|1|U|736
*
5OQL|1|1|A|746
5OQL|1|1|G|747
5OQL|1|1|A|748
5OQL|1|1|G|749

Current chains

Chain 1

35S rRNA

Nearby chains

Chain o

40S ribosomal protein S6