IL_5OQL_040

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUA*UUCUC

Length

8 nucleotides

Bulged bases

5OQL|1|1|U|844

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_040 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.2413

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5OQL|1|1|G|786
5OQL|1|1|U|787
5OQL|1|1|A|788
*
5OQL|1|1|U|843
5OQL|1|1|U|844
5OQL|1|1|C|845
5OQL|1|1|U|846
5OQL|1|1|C|847

Current chains

Chain 1

35S rRNA

Nearby chains

Chain m

40S ribosomal protein S4

Chain q

40S ribosomal protein S8