IL_5OQL_047

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5OQL|1|1|U|904, 5OQL|1|1|C|905, 5OQL|1|1|G|906

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_047 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4119

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

5OQL|1|1|U|902
5OQL|1|1|U|903
5OQL|1|1|U|904
5OQL|1|1|C|905
5OQL|1|1|G|906
5OQL|1|1|A|907
*
5OQL|1|1|U|929
5OQL|1|1|G|930

Current chains

Chain 1

35S rRNA

Nearby chains

Chain q

40S ribosomal protein S8

Chain v

40S ribosomal protein S11-like protein