IL_5OQL_050

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5OQL|1|1|U|1024

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_050 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.2799

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5OQL|1|1|U|1023
5OQL|1|1|U|1024
5OQL|1|1|A|1025
*
5OQL|1|1|U|1047
5OQL|1|1|A|1048

Current chains

Chain 1

35S rRNA

Nearby chains

Chain Z

Bms1

Chain m

40S ribosomal protein S4