IL_5OQL_054
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- 5OQL|1|1|A|1125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_054 not in the Motif Atlas
- Geometric match to IL_8VTW_081
- Geometric discrepancy: 0.2643
- The information below is about IL_8VTW_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
5OQL|1|1|G|1098
5OQL|1|1|A|1099
5OQL|1|1|G|1100
*
5OQL|1|1|C|1120
5OQL|1|1|G|1121
5OQL|1|1|A|1122
5OQL|1|1|G|1123
5OQL|1|1|G|1124
5OQL|1|1|A|1125
5OQL|1|1|A|1126
5OQL|1|1|C|1127
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain C
- Utp3
- Chain Z
- Bms1
- Chain r
- 40S ribosomal protein s9-like protein
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