IL_5OQL_056

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_056 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2354

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5OQL|1|1|A|1102
5OQL|1|1|C|1103
5OQL|1|1|A|1104
*
5OQL|1|1|U|1116
5OQL|1|1|U|1117

Current chains

Chain 1

35S rRNA

Nearby chains

Chain Z

Bms1

Chain r

40S ribosomal protein s9-like protein

Chain y

40S ribosomal protein S24