IL_5OQL_057
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCAAGUC*GCAGCCGCGGUAAUUCC
- Length
- 25 nucleotides
- Bulged bases
- 5OQL|1|1|A|1140, 5OQL|1|1|C|1156, 5OQL|1|1|C|1157, 5OQL|1|1|A|1163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OQL|1|1|G|1136
5OQL|1|1|G|1137
5OQL|1|1|C|1138
5OQL|1|1|A|1139
5OQL|1|1|A|1140
5OQL|1|1|G|1141
5OQL|1|1|U|1142
5OQL|1|1|C|1143
*
5OQL|1|1|G|1152
5OQL|1|1|C|1153
5OQL|1|1|A|1154
5OQL|1|1|G|1155
5OQL|1|1|C|1156
5OQL|1|1|C|1157
5OQL|1|1|G|1158
5OQL|1|1|C|1159
5OQL|1|1|G|1160
5OQL|1|1|G|1161
5OQL|1|1|U|1162
5OQL|1|1|A|1163
5OQL|1|1|A|1164
5OQL|1|1|U|1165
5OQL|1|1|U|1166
5OQL|1|1|C|1167
5OQL|1|1|C|1168
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain B
- Utp2
- Chain C
- Utp3
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain Z
- Bms1
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
- Chain c
- Putative U3 small nucleolar ribonucleoprotein protein
- Chain x
- 40S ribosomal protein s23-like protein
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