IL_5OQL_062

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_062 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.1646

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5OQL|1|1|A|1456
5OQL|1|1|G|1457
5OQL|1|1|U|1458
*
5OQL|1|1|G|1539
5OQL|1|1|A|1540
5OQL|1|1|U|1541

Current chains

Chain 1

35S rRNA

Nearby chains

Chain l

40S ribosomal protein S1

Chain s

40S ribosomal protein S13-like protein