IL_5OQL_065
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 5OQL|1|1|G|1498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_065 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.27
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5OQL|1|1|U|1478
5OQL|1|1|U|1479
5OQL|1|1|G|1480
5OQL|1|1|U|1481
5OQL|1|1|C|1482
5OQL|1|1|A|1483
5OQL|1|1|G|1484
*
5OQL|1|1|C|1495
5OQL|1|1|U|1496
5OQL|1|1|U|1497
5OQL|1|1|G|1498
5OQL|1|1|G|1499
5OQL|1|1|A|1500
5OQL|1|1|U|1501
5OQL|1|1|U|1502
5OQL|1|1|U|1503
5OQL|1|1|A|1504
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain l
- 40S ribosomal protein S1
- Chain t
- 40S ribosomal protein S14-like protein
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