IL_5OQL_070
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAA*UUUGUACACACCGCC
- Length
- 18 nucleotides
- Bulged bases
- 5OQL|1|1|C|2222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_070 not in the Motif Atlas
- Geometric match to IL_6CZR_122
- Geometric discrepancy: 0.2972
- The information below is about IL_6CZR_122
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 183
Unit IDs
5OQL|1|1|G|1734
5OQL|1|1|A|1735
5OQL|1|1|A|1736
*
5OQL|1|1|U|2209
5OQL|1|1|U|2210
5OQL|1|1|U|2211
5OQL|1|1|G|2212
5OQL|1|1|U|2213
5OQL|1|1|A|2214
5OQL|1|1|C|2215
5OQL|1|1|A|2216
5OQL|1|1|C|2217
5OQL|1|1|A|2218
5OQL|1|1|C|2219
5OQL|1|1|C|2220
5OQL|1|1|G|2221
5OQL|1|1|C|2222
5OQL|1|1|C|2223
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain A
- Periodic tryptophan protein 2-like protein
- Chain I
- Utp12
- Chain J
- Utp13
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
- Chain c
- Putative U3 small nucleolar ribonucleoprotein protein
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