IL_5OQL_072

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_072 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.2555

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5OQL|1|1|C|1757
5OQL|1|1|C|1758
5OQL|1|1|U|1759
5OQL|1|1|G|1760
*
5OQL|1|1|C|2046
5OQL|1|1|G|2047
5OQL|1|1|C|2048
5OQL|1|1|G|2049

Current chains

Chain 1

35S rRNA

Nearby chains

Chain B

Utp2

Chain Z

Bms1

Chain b

Putative U3 small nucleolar ribonucleoprotein