IL_5OQL_073

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG*CGUGCUGAG

Length

14 nucleotides

Bulged bases

5OQL|1|1|U|2056, 5OQL|1|1|C|2120, 5OQL|1|1|G|2155

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|1|C|2053
5OQL|1|1|A|2054
5OQL|1|1|C|2055
5OQL|1|1|U|2056
5OQL|1|1|G|2057
*
5OQL|1|1|C|2116
5OQL|1|1|G|2117
5OQL|1|1|U|2118
5OQL|1|1|G|2119
5OQL|1|1|C|2120
5OQL|1|1|U|2121
5OQL|1|1|G|2155
5OQL|1|1|A|2156
5OQL|1|1|G|2157

Current chains

Chain 1

35S rRNA

Nearby chains

Chain L

Utp15

Chain e

Emg1

Chain n

40S ribosomal protein s5-like protein