IL_5OQL_080

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAG*CGAUGAUC

Length

13 nucleotides

Bulged bases

5OQL|1|2|U|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|2|G|111
5OQL|1|2|U|112
5OQL|1|2|G|113
5OQL|1|2|A|114
5OQL|1|2|G|115
*
5OQL|1|2|C|190
5OQL|1|2|G|191
5OQL|1|2|A|192
5OQL|1|2|U|193
5OQL|1|2|G|194
5OQL|1|2|A|195
5OQL|1|2|U|196
5OQL|1|2|C|197

Current chains

Chain 2

U3 snoRNA

Nearby chains

Chain C

Utp3

Chain T

Putative nucleolar protein

Chain W

Snu13

Chain X

Rrp9

Chain k

Fcf2