IL_5OQL_081

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCCAUUUAC*GUGGC

Length

16 nucleotides

Bulged bases

5OQL|1|2|G|189

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|2|G|115
5OQL|1|2|G|116
5OQL|1|2|U|117
5OQL|1|2|C|118
5OQL|1|2|C|119
5OQL|1|2|A|123
5OQL|1|2|U|124
5OQL|1|2|U|125
5OQL|1|2|U|126
5OQL|1|2|A|127
5OQL|1|2|C|128
*
5OQL|1|2|G|186
5OQL|1|2|U|187
5OQL|1|2|G|188
5OQL|1|2|G|189
5OQL|1|2|C|190

Current chains

Chain 2

U3 snoRNA

Nearby chains

Chain T

Putative nucleolar protein

Chain W

Snu13

Chain X

Rrp9