IL_5OSG_001

3D structure

PDB id

5OSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Leishmania donovani 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5OSG|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OSG_001 not in the Motif Atlas

Geometric match to IL_6JDV_003

Geometric discrepancy: 0.3887

The information below is about IL_6JDV_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5OSG|1|2|C|198
5OSG|1|2|C|199
*
5OSG|1|2|G|226
5OSG|1|2|U|227
5OSG|1|2|G|228

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

RNA binding protein, putative