IL_5T62_005
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 5T62|1|A|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0651
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T62|1|A|C|31
5T62|1|A|U|32
5T62|1|A|G|33
5T62|1|A|A|34
5T62|1|A|A|35
5T62|1|A|C|36
5T62|1|A|U|37
5T62|1|A|U|38
*
5T62|1|A|A|45
5T62|1|A|U|46
5T62|1|A|C|47
5T62|1|A|A|48
5T62|1|A|A|49
5T62|1|A|U|50
5T62|1|A|A|51
5T62|1|A|A|52
5T62|1|A|G|53
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L42-A
- Chain a
- 60S ribosomal protein L15-A
- Chain n
- 60S ribosomal protein L28
- Chain w
- 60S ribosomal protein L37-A
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