IL_5T62_015
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 5T62|1|A|A|398, 5T62|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_015 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1164
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5T62|1|A|G|376
5T62|1|A|A|377
5T62|1|A|A|378
5T62|1|A|C|379
*
5T62|1|A|G|390
5T62|1|A|A|391
5T62|1|A|G|392
5T62|1|A|U|393
5T62|1|A|G|394
5T62|1|A|A|395
5T62|1|A|A|396
5T62|1|A|A|397
5T62|1|A|A|398
5T62|1|A|A|399
5T62|1|A|G|400
5T62|1|A|U|401
5T62|1|A|A|402
5T62|1|A|C|403
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain c
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L26-A
- Chain y
- 60S ribosomal protein L39
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