IL_5T62_020
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUAAAUCCAU*GUGGGAAUAC
- Length
- 22 nucleotides
- Bulged bases
- 5T62|1|A|A|519, 5T62|1|A|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T62|1|A|G|517
5T62|1|A|G|518
5T62|1|A|A|519
5T62|1|A|U|520
5T62|1|A|A|521
5T62|1|A|A|522
5T62|1|A|A|523
5T62|1|A|U|524
5T62|1|A|C|525
5T62|1|A|C|526
5T62|1|A|A|527
5T62|1|A|U|528
*
5T62|1|A|G|564
5T62|1|A|U|565
5T62|1|A|G|566
5T62|1|A|G|567
5T62|1|A|G|568
5T62|1|A|A|569
5T62|1|A|A|570
5T62|1|A|U|571
5T62|1|A|A|572
5T62|1|A|C|573
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain I
- 60S ribosomal protein L7-A
- Chain O
- 60S ribosomal protein L14-A
- Chain f
- 60S ribosomal protein L20-A
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