IL_5T62_027

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_027 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1668

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5T62|1|A|C|758
5T62|1|A|U|759
5T62|1|A|G|760
5T62|1|A|A|761
5T62|1|A|U|762
5T62|1|A|G|763
*
5T62|1|A|C|768
5T62|1|A|G|769
5T62|1|A|G|770
5T62|1|A|A|771
5T62|1|A|U|772
5T62|1|A|G|773

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L42-A

Chain n

60S ribosomal protein L28