IL_5T62_077

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5T62|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_077 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1045

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5T62|1|A|C|1918
5T62|1|A|G|1919
5T62|1|A|U|1920
5T62|1|A|A|1921
5T62|1|A|A|1922
5T62|1|A|C|1923
*
5T62|1|A|G|1928
5T62|1|A|G|1929
5T62|1|A|A|1930
5T62|1|A|U|1931
5T62|1|A|A|1932
5T62|1|A|A|1933
5T62|1|A|G|1934

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L43-A

Chain W

Large subunit GTPase 1