IL_5T62_097

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAGGGUGUAGAAUAAG*CUACCUUU

Length

25 nucleotides

Bulged bases

5T62|1|A|U|2453, 5T62|1|A|A|2458, 5T62|1|A|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T62|1|A|A|2447
5T62|1|A|G|2448
5T62|1|A|A|2449
5T62|1|A|G|2450
5T62|1|A|G|2451
5T62|1|A|G|2452
5T62|1|A|U|2453
5T62|1|A|G|2454
5T62|1|A|U|2455
5T62|1|A|A|2456
5T62|1|A|G|2457
5T62|1|A|A|2458
5T62|1|A|A|2459
5T62|1|A|U|2460
5T62|1|A|A|2461
5T62|1|A|A|2462
5T62|1|A|G|2463
*
5T62|1|A|C|2492
5T62|1|A|U|2493
5T62|1|A|A|2494
5T62|1|A|C|2495
5T62|1|A|C|2496
5T62|1|A|U|2497
5T62|1|A|U|2498
5T62|1|A|U|2499

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain S

Ribosomal Protein uL1