IL_5T62_098

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T62|1|A|G|2466
5T62|1|A|G|2467
5T62|1|A|A|2468
5T62|1|A|G|2469
*
5T62|1|A|C|2476
5T62|1|A|G|2477
5T62|1|A|C|2478
5T62|1|A|C|2479
5T62|1|A|A|2480
5T62|1|A|G|2481
5T62|1|A|U|2482
5T62|1|A|G|2483
5T62|1|A|A|2484
5T62|1|A|A|2485
5T62|1|A|A|2486
5T62|1|A|U|2487
5T62|1|A|A|2488
5T62|1|A|C|2489

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain S

Ribosomal Protein uL1

Chain V

60S ribosomal export protein NMD3