IL_5T62_148

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCAAC*GUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T62|1|A|G|161
5T62|1|A|G|162
5T62|1|A|C|163
5T62|1|A|A|164
5T62|1|A|A|165
5T62|1|A|C|166
*
5T62|1|A|G|256
5T62|1|A|U|257
5T62|1|A|G|258
5T62|1|A|C|259
5T62|1|A|C|260

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain u

60S ribosomal protein L35-A