IL_5T62_151

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_151 not in the Motif Atlas

Homologous match to IL_8P9A_251

Geometric discrepancy: 0.114

The information below is about IL_8P9A_251

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

5T62|1|A|G|725
5T62|1|A|G|726
5T62|1|A|G|727
5T62|1|A|G|728
*
5T62|1|A|U|741
5T62|1|A|G|742
5T62|1|A|C|743
5T62|1|A|A|744
5T62|1|A|C|745

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain d

60S ribosomal protein L18-A

Chain o

60S ribosomal protein L29