IL_5T62_152

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAGACAGCC*GGCCGAA

Length

18 nucleotides

Bulged bases

5T62|1|A|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T62|1|A|U|1218
5T62|1|A|C|1219
5T62|1|A|U|1220
5T62|1|A|A|1221
5T62|1|A|G|1222
5T62|1|A|A|1223
5T62|1|A|C|1224
5T62|1|A|A|1225
5T62|1|A|G|1226
5T62|1|A|C|1227
5T62|1|A|C|1228
*
5T62|1|A|G|1281
5T62|1|A|G|1282
5T62|1|A|C|1283
5T62|1|A|C|1284
5T62|1|A|G|1285
5T62|1|A|A|1286
5T62|1|A|A|1287

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain f

60S ribosomal protein L20-A

Chain z

Ubiquitin-60S ribosomal protein L40