IL_5T62_156
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAUCC
- Length
- 43 nucleotides
- Bulged bases
- 5T62|1|A|C|2539, 5T62|1|A|A|2540, 5T62|1|A|G|2549, 5T62|1|A|U|2550, 5T62|1|A|U|2551, 5T62|1|A|C|2552, 5T62|1|A|U|2553, 5T62|1|A|A|2554, 5T62|1|A|C|2560, 5T62|1|A|C|2582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T62|1|A|G|2527
5T62|1|A|G|2528
5T62|1|A|A|2529
5T62|1|A|G|2530
5T62|1|A|C|2531
5T62|1|A|U|2532
5T62|1|A|G|2533
5T62|1|A|G|2534
5T62|1|A|A|2535
5T62|1|A|A|2536
5T62|1|A|U|2537
5T62|1|A|U|2538
5T62|1|A|C|2539
5T62|1|A|A|2540
5T62|1|A|U|2541
5T62|1|A|U|2542
5T62|1|A|U|2543
5T62|1|A|U|2544
5T62|1|A|C|2545
5T62|1|A|C|2546
5T62|1|A|A|2547
5T62|1|A|C|2548
5T62|1|A|G|2549
5T62|1|A|U|2550
5T62|1|A|U|2551
5T62|1|A|C|2552
5T62|1|A|U|2553
5T62|1|A|A|2554
5T62|1|A|G|2555
5T62|1|A|C|2556
5T62|1|A|A|2557
5T62|1|A|U|2558
5T62|1|A|U|2559
5T62|1|A|C|2560
5T62|1|A|A|2561
5T62|1|A|A|2562
5T62|1|A|G|2563
*
5T62|1|A|U|2578
5T62|1|A|G|2579
5T62|1|A|A|2580
5T62|1|A|U|2581
5T62|1|A|C|2582
5T62|1|A|C|2583
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L8-A
- Chain R
- 60S ribosomal protein L43-A
- Chain k
- 60S ribosomal protein L25
- Chain m
- 60S ribosomal protein L27-A
- Chain p
- 60S ribosomal protein L30
- Chain t
- 60S ribosomal protein L34-A
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