IL_5T62_157
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_157 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0989
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T62|1|A|C|2889
5T62|1|A|A|2890
5T62|1|A|U|2891
5T62|1|A|A|2892
*
5T62|1|A|U|2909
5T62|1|A|A|2910
5T62|1|A|A|2911
5T62|1|A|G|2912
5T62|1|A|C|2913
5T62|1|A|G|2914
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain K
- 60S ribosomal protein L9-A
- Chain b
- 60S ribosomal protein L16-A
- Chain i
- 60S ribosomal protein L23-A
- Chain z
- Ubiquitin-60S ribosomal protein L40
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