IL_5T6R_014
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_014 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0741
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T6R|1|A|G|404
5T6R|1|A|U|405
5T6R|1|A|G|406
5T6R|1|A|A|407
5T6R|1|A|A|408
5T6R|1|A|A|409
5T6R|1|A|U|410
*
5T6R|1|C|A|13
5T6R|1|C|C|14
5T6R|1|C|G|15
5T6R|1|C|G|16
5T6R|1|C|A|17
5T6R|1|C|U|18
5T6R|1|C|C|19
Current chains
- Chain A
- 25S Ribosomal RNA
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain c
- 60S ribosomal protein L17-A
- Chain r
- 60S ribosomal protein L32
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