IL_5T6R_016
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_016 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.1841
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5T6R|1|A|C|435
5T6R|1|A|A|436
5T6R|1|A|G|437
5T6R|1|A|A|438
5T6R|1|A|C|439
5T6R|1|A|A|440
5T6R|1|A|G|494
5T6R|1|A|G|495
*
5T6R|1|A|C|618
5T6R|1|A|A|619
5T6R|1|A|U|620
5T6R|1|A|A|621
5T6R|1|A|A|622
5T6R|1|A|U|623
5T6R|1|A|G|624
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L6-A
- Chain c
- 60S ribosomal protein L17-A
- Chain r
- 60S ribosomal protein L32
Coloring options: