IL_5T6R_025

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_025 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1209

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5T6R|1|A|C|758
5T6R|1|A|U|759
5T6R|1|A|G|760
5T6R|1|A|A|761
5T6R|1|A|U|762
5T6R|1|A|G|763
*
5T6R|1|A|C|768
5T6R|1|A|G|769
5T6R|1|A|G|770
5T6R|1|A|A|771
5T6R|1|A|U|772
5T6R|1|A|G|773

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L42-A

Chain n

60S ribosomal protein L28