IL_5T6R_040

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_040 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.105

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5T6R|1|A|A|1006
5T6R|1|A|U|1007
5T6R|1|A|U|1008
5T6R|1|A|A|1009
*
5T6R|1|A|U|1041
5T6R|1|A|U|1042
5T6R|1|A|C|1043
5T6R|1|A|U|1044

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L5

Chain L

60S ribosomal protein L10