IL_5T6R_056
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 5T6R|1|A|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_056 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1159
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
5T6R|1|A|U|1388
5T6R|1|A|G|1389
5T6R|1|A|A|1390
5T6R|1|A|C|1391
5T6R|1|A|G|1392
5T6R|1|A|A|1393
5T6R|1|A|A|1394
5T6R|1|A|G|1395
*
5T6R|1|A|U|1415
5T6R|1|A|C|1416
5T6R|1|A|G|1417
5T6R|1|A|A|1418
5T6R|1|A|A|1419
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain H
- 60S ribosomal protein L6-A
- Chain c
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L26-A
- Chain r
- 60S ribosomal protein L32
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