IL_5T6R_095

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGAG*CGCCAGUGAAAUACC

Length

20 nucleotides

Bulged bases

5T6R|1|A|A|2484, 5T6R|1|A|A|2485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T6R|1|A|G|2465
5T6R|1|A|G|2466
5T6R|1|A|G|2467
5T6R|1|A|A|2468
5T6R|1|A|G|2469
*
5T6R|1|A|C|2476
5T6R|1|A|G|2477
5T6R|1|A|C|2478
5T6R|1|A|C|2479
5T6R|1|A|A|2480
5T6R|1|A|G|2481
5T6R|1|A|U|2482
5T6R|1|A|G|2483
5T6R|1|A|A|2484
5T6R|1|A|A|2485
5T6R|1|A|A|2486
5T6R|1|A|U|2487
5T6R|1|A|A|2488
5T6R|1|A|C|2489
5T6R|1|A|C|2490

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain S

Ribosomal Protein uL1

Chain V

Maltose binding protein, 60S ribosomal export protein Nmd3 fusion