IL_5T6R_101

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_101 not in the Motif Atlas

Homologous match to IL_5TBW_102

Geometric discrepancy: 0.1247

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5T6R|1|A|G|2823
5T6R|1|A|G|2824
*
5T6R|1|A|U|2865
5T6R|1|A|U|2866
5T6R|1|A|C|2867

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain V

Maltose binding protein, 60S ribosomal export protein Nmd3 fusion

Chain o

60S ribosomal protein L29