IL_5T6R_129

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

5T6R|1|A|U|3319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_129 not in the Motif Atlas

Geometric match to IL_5TBW_130

Geometric discrepancy: 0.2133

The information below is about IL_5TBW_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5T6R|1|A|G|3318
5T6R|1|A|U|3319
5T6R|1|A|A|3320
*
5T6R|1|A|U|3387
5T6R|1|A|C|3388

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain q

60S ribosomal protein L31-A