IL_5T6R_144
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GU*AUC
- Length
- 5 nucleotides
- Bulged bases
- 5T6R|1|C|U|90
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_144 not in the Motif Atlas
- Geometric match to IL_5TBW_146
- Geometric discrepancy: 0.0904
- The information below is about IL_5TBW_146
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
5T6R|1|C|G|68
5T6R|1|C|U|69
*
5T6R|1|C|A|89
5T6R|1|C|U|90
5T6R|1|C|C|91
Current chains
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 60S ribosomal protein L26-A
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
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