IL_5T6R_150

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGGAGUGUGUAACAACUCAC

Length

39 nucleotides

Bulged bases

5T6R|1|A|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T6R|1|A|G|1230
5T6R|1|A|A|1231
5T6R|1|A|C|1232
5T6R|1|A|G|1233
5T6R|1|A|G|1234
5T6R|1|A|U|1235
5T6R|1|A|G|1236
5T6R|1|A|G|1237
5T6R|1|A|C|1238
*
5T6R|1|A|G|1250
5T6R|1|A|A|1251
5T6R|1|A|A|1252
5T6R|1|A|U|1253
5T6R|1|A|C|1254
5T6R|1|A|C|1255
5T6R|1|A|G|1256
5T6R|1|A|C|1257
5T6R|1|A|U|1258
5T6R|1|A|A|1259
5T6R|1|A|A|1260
5T6R|1|A|G|1261
5T6R|1|A|G|1262
5T6R|1|A|A|1263
5T6R|1|A|G|1264
5T6R|1|A|U|1265
5T6R|1|A|G|1266
5T6R|1|A|U|1267
5T6R|1|A|G|1268
5T6R|1|A|U|1269
5T6R|1|A|A|1270
5T6R|1|A|A|1271
5T6R|1|A|C|1272
5T6R|1|A|A|1273
5T6R|1|A|A|1274
5T6R|1|A|C|1275
5T6R|1|A|U|1276
5T6R|1|A|C|1277
5T6R|1|A|A|1278
5T6R|1|A|C|1279

Current chains

Chain A

25S Ribosomal RNA

Nearby chains