IL_5T7V_001

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

5T7V|1|A|G|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_001 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.4251

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

5T7V|1|A|U|31
5T7V|1|A|G|32
5T7V|1|A|A|33
*
5T7V|1|A|U|560
5T7V|1|A|A|561

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S3

30S ribosomal protein S12